Here is a list of software and code I have worked on.
PL_fMRI
PL_fMRI is a set of python scripts
for analyzing fMRI data using cubical persistence. Part of a forthcoming
project.
pyscapes
Persistence Landscapes in python
pyscapes is a package written by Gabby Angeloro and myself as part of her
master’s thesis for working with persistence landscapes in python. Persistence
Landscapes are a stable feature maps for persistence diagrams. There are exact
and approximate methods implemented, together with arithmetic and visualization
methods. The original code is available
here.
pyscapes has now been formally included into
persim and is part of the
scikit-tda library.
fpmods
Finitely presented modules over the Steenrod algebra
fpmods is a sage package I wrote as part of my master’s thesis for working
with modules over the Steenrod algebra. To keep all of the computations exact,
we restrict to only finitely presented modules over the Steenrod algebra. Each
such module is defined over a finite sub-Hopf algebra where finite computations
can be carried out and then tensored up to the full Steenrod algebra. The code
has been incorporated into sage.
The original code is available here