Here is a list of software and code I have worked on.

My github page

PL_fMRI

PL_fMRI is a set of python scripts for analyzing fMRI data using cubical persistence. Part of a forthcoming project.

pyscapes

Persistence Landscapes in python

pyscapes is a package written by Gabby Angeloro and myself as part of her master’s thesis for working with persistence landscapes in python. Persistence Landscapes are a stable feature maps for persistence diagrams. There are exact and approximate methods implemented, together with arithmetic and visualization methods. The original code is available here.

pyscapes has now been formally included into persim and is part of the scikit-tda library.

fpmods

Finitely presented modules over the Steenrod algebra

fpmods is a sage package I wrote as part of my master’s thesis for working with modules over the Steenrod algebra. To keep all of the computations exact, we restrict to only finitely presented modules over the Steenrod algebra. Each such module is defined over a finite sub-Hopf algebra where finite computations can be carried out and then tensored up to the full Steenrod algebra. The code is currently in the process of being incorporated into sage.

The code is available here